There are several quantities output by Cupid which describe the sensible heat flux from the plant-soil-atmosphere system. These are outlined here.
Sensible heat flux is always positive when heat is being tranported upwards (as opposed to soil heat conduction, where heat flux down into the soil is positive).
QCOND is computed in the subroutine profl2 as such:
qcond(jz)=akh(jz)*(tn(ihr,jz+1)-tn(ihr,jz))
where TN is the temperature profile through all the layers. This quantity describes the heat flux from the combined soil and canopy systems into the atmosphere.
This quantity describes the heat flux from the canopy alone.
HCPY = HTOT + HCPYS